Reports of the students having finished the MPB so far:

Class Report title Student name
2011-2012Origin of genes with unresolved ancestry - Analysis of orphan genes in H.sapiens, D.melanogaster and S.cerevisiae Adrian Cesar Razquin
2010-2011Endometriosis biomarkers: discovery experiment and contextualization Jonathan Sobel
2009-2010In vitro synthesis of glycopeptides and analysis of glycopeptide fragmentation Susanne Muller
  LC-MSMS identication of small molecules: making sense of the unknown Celine Moret
  Exploring the Capabilities of High Precision MS1 Data in Small Molecule Identication Anastasi Chasapi
2008-2009 Immune response profiling with protein microarrays for autoantibodies characterisation as biomarkers: applications in stroke and human african trypanosomiasis Francisco Borja Consigliere
  DeLiberator: How to create good MS2 decoy spectra Yuki Ohta
  Metabolic network analysis: Towards the construction of a meaningful network Nikolaus Fortelny
  Potential biomarker expression and variation during the course of infection in experimentally infected Vervet Monkeys by T. b. rhodesiense Sanaz Zarghami
  Developing a sensitive and selective method for peptide detection by mass spectrometry HuiSong Pak
  MaRMot, a tool for experimental MRM transitions design from Mascot repository Samuel Croset
  Linking UniProtKB/Swiss-Prot Proteins to Pathway Information Jia Li
2007-2008 Boosting peptide ms/ms identification computing times using Nvidia Graphic Cards with a GPGPU Engine Ivan Topolsky
  Quantitative proteomic analysis of bile from patients suffering from malignant biliary strictures Paola Malaspina Antinori
  Analysis of c-Src kinase mutants for understanding conformational plasticity Emilio E. Espinola
  A Common Processing and Statistical Frame for Label-Free Quantitative Proteomic Analyses Oksana Riba-Grognuz
2006-2007 The Mycoplasma conjunctivae genome sequencing, annotation and analysis Sandra Calderon Copete
  Extraction d'informations sur la caracterisation fonctionnelle des variants Emna Kamoun
  New automatically built profiles for a better understanding of the peroxidase superfamily evolution Dominique Koua
  Restructuring GPSDB database Emilie Pasche
  Isobaric Tag based MS Quantification Algorithms Analysis and Implementation Martial Sankar
  Role of Glutathione-S transferase p (GSTpi) in chemically induced neurotoxicity Tatjana Sajic
  Imaging Shotgun IPG-IEF Jovan Simicevic
  Effect of chronic glucose stimulation on B cells and insulin secretory granules (ISG) Birgit Vaney
2005-2006 From Venomics to High Throughput Screening Daniel Biasse
  Shorcut shotgun IEF Alexis Chauvet
  Evaluation of gene/protein name recognition programs Sanaa Chtioui
  Mining profiles: a new tool to evaluate PROSITE pattern matches Beatrice Cuche
  Collection-description and benchmark of spectrum quality assessment algorithms Anne Elisabeth Favre
  Retrieval of variants-related articles from PubMed Nathalie Lachenal
  Characterisation of human cerebrospinal fluid (CSF) after Tandem Mass Tag (TMT0) labelling Virgnie Licker
  Analyse structurelle des variants UniProtKB/Swiss-Prot présents dans les interfaces entre protéines Gregory Loichot
  InteGER (Integration tool for Gene Expression Results) Yann Mauron
  Mapping disease annotation in Swiss-Prot to Medical terminology MeSH Anais Mottaz
  A new implementation for Swiss-Prot Variant Pages and a study on the conservation scores of all Swiss-Prot variants Harris Procopio
  PEAKNOVO: tag extraction module for candidate peptide filtering Nazim Rahman
  Tools for proteomic standards (MIAPE documents) Xavier Robin
  Erythrocytes microparticles Olivier Rubin
  Serono Pathways and Interactions Database (SPID) Igor Shynkaren
  Proteomic analysis of the venom of Conus consors Ilona Vincze
  Synthesis and improvement of peptides isolated from the venom of cone snails Anne Zufferey
2004-2005 Modeling of a P-selectin mediated adhesion inhibitor Loic Baerlocher
  Enrichment of N-alpha Terminal Acetylation proteins and their predictions Samuel Kanor Kudaya
  Quality assessment of peptide mass spectra Roman Mylonas
  Evaluation of programs for the prediction of GPI-anchor in proteins Natalia Sernova